Softwares
R Packages:
FMI: On the conventional definition of path-specific effects - fully mediated interaction with multiple ordered mediators
Related Paper: An-Shun Tai, Le-Hsuan Liao, and Sheng-Hsuan Lin* (2022). On the conventional definition of path-specific effects - fully mediated interaction with multiple ordered mediators. Epidemiology. 33(6): p 817-827. DOI: 10.1097/EDE.0000000000001520.
GitHub: https://github.com/AshTai/FMI
PEACH: Detection of cell separation–induced gene expression through a penalized deconvolution approach
Related Paper: An-Shun Tai, Chun-Chao Wang, and Wen-Ping Hsieh* (2022). Detection of cell separation–induced gene expression through a penalized deconvolution approach. Statistics in Biosciences. https://doi.org/10.1007/s12561-022-09344-8.
GitHub: https://github.com/AshTai/PEACH
MedMR: Multiply robust estimation of natural indirect effects with multiple ordered mediators.
Related Paper: An-Shun Tai and Sheng-Hsuan Lin* (2024). Multiply robust estimation of natural indirect effects with multiple ordered mediators. Statistics in Medicine. 43(4):656-673. doi: 10.1002/sim.9977.
GitHub: https://github.com/AshTai/MedMR
BayICE: A hierarchical Bayesian deconvolution model with stochastic search variable selection
Related Paper: An-Shun Tai, George C. Tseng, and Wen-Ping Hsieh* (2021). BayICE: A Bayesian hierarchical model for semi-reference-based deconvolution of bulk transcriptomic data. Annals of Applied Statistics. 15(1) 391 - 411. https://doi.org/10.1214/20-AOAS1376.
GitHub: https://github.com/AshTai/BayICE
iPSEsv: General approach of causal mediation analysis for survival outcome under sequential mediators
Related Paper:
GitHub: https://github.com/AshTai/iPSEsv
CloneDeMix: Clone deconvolution via DNA sequencing
Related Paper: An-Shun Tai, Chien-Hua Peng, Shih-Chi Peng, and Wen-Ping Hsieh (2018). Decomposing the subclonal structure of tumors with two-way mixture models on copy number aberrations. PLOS ONE. 13(12): e0206579.